SRA SRA667466
SRS SRS3060053
SRR SRR6854069
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 1,700
Number of exp. genes 22,160 (median number of expressed genes per cell=998)
Number of clusters 10
Tissue Amygdala
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=missing|isolate=Ad37,Ad38|age=p21|sex=missing|tissue=Amygdala|cell_index=SI-3A-D1|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Amygdala
Gene search
Download Count matrix (raw read counts, R sparse data object, 13.6 Mb)
Cell clustering results
Putative cell types Endothelial cells (brain), Interneurons, Macrophages, Neuroendocrine cells, Neurons, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.