Thalamus
SRA SRA667466
SRS SRS3060059
SRR SRR6854064
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 5,074
Number of exp. genes 25,179 (median number of expressed genes per cell=1027)
Number of clusters 13
Tissue Thalamus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=Swiss|isolate=Ad33, Ad34|age=p25-27|sex=pooled male and female|tissue=Thalamus|cell_index=SI-3A-D2|BioSampleModel=Model organism or animal|;RNA-Seq of mouse Thalamus
Gene search
Download Count matrix (raw read counts, R sparse data object, 27.6 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Interneurons, Macrophages, Microglia, Neurons, Oligodendrocytes, Smooth muscle cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.