Ventral striatum
SRA SRA667466
SRS SRS3060066
SRR SRR6854053
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 7,663
Number of exp. genes 28,282 (median number of expressed genes per cell=1362)
Number of clusters 21
Tissue Ventral striatum
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad13|age=p25|sex=female|tissue=StriatumVentral|cell_index=SI-3A-D8|BioSampleModel=Model organism or animal|;RNA-Seq of mouse StriatumVentral
Gene search
Download Count matrix (raw read counts, R sparse data object, 32.6 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Erythroid-like and erythroid precursor cells, Fibroblasts, Interneurons, Macrophages, Microglia, Neuroblasts, Neuroendocrine cells, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.