Ventral midbrain
SRA SRA670243
SRS SRS3078084
SRR SRR6877265
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 5,603
Number of exp. genes 27,496 (median number of expressed genes per cell=1572)
Number of clusters 18
Tissue Ventral midbrain
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=CD-1|isolate=Ad26|age=p20|sex=male|tissue=ventral midbrain|cell_index=SI-3A-G10|BioSampleModel=Model organism or animal|
Gene search
Download Count matrix (raw read counts, R sparse data object, 24.7 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Fibroblasts (brain), Macrophages, Microglia, Neurons, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.