Hippocampus
SRA SRA675945
SRS SRS3100153
SRR SRR6908383
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina NovaSeq 6000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 5,088
Number of exp. genes 29,821 (median number of expressed genes per cell=2487)
Number of clusters 20
Tissue Hippocampus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=Hippocampus_saline|strain=C57BL/6|age=post natal day 14|treated with=Saline (i.p. injection) for 2 hours|tissue=Hippocampus|;GSM3070096: SA03; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 35.7 Mb)
Cell clustering results
Putative cell types Astrocytes, Cajal-Retzius cells, Endothelial cells (brain), Ependymal cells, Erythroid-like and erythroid precursor cells, Fibroblasts (brain), Immature neurons, Interneurons, Macrophages, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Pericytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.