SRA SRA675945
SRS SRS3100155
SRR SRR6908385
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina NovaSeq 6000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 10,019
Number of exp. genes 33,018 (median number of expressed genes per cell=2139)
Number of clusters 41
Tissue Hippocampus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=Hippocampus_LPS|strain=C57BL/6|age=post natal day 14|treated with=10 mg/kg LPS (i.p. injection) for 2 hours|tissue=Hippocampus|;GSM3070098: LPS02; Mus musculus; RNA-Seq
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Putative cell types Astrocytes, B cells, Cajal-Retzius cells, Choroid plexus cells, Endothelial cells, Ependymal cells, Erythroid-like and erythroid precursor cells, Immature neurons, Interneurons, Macrophages, Microglia, Monocytes, Neural stem/precursor cells, Neuroendocrine cells, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes, Pericytes, Smooth muscle cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.