Colon
SRA SRA689041
SRS SRS3166675
SRR SRR7001027
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 2,878
Number of exp. genes 22,408 (median number of expressed genes per cell=777)
Number of clusters 10
Tissue Colon
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population mesenchymal cells
Metadata (raw) source_name=colon-Gli1-tdTomato cells|strain=C57BL6|cell type=mesenchymal cells|tissue=colon|
Gene search
Download Count matrix (raw read counts, R sparse data object, 19.6 Mb)
Cell clustering results
Putative cell types Acinar cells, B cells, Enterocytes, Epithelial cells, Macrophages, Paneth cells, Pericytes, Smooth muscle cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.