Spinal cord
SRA SRA699165
SRS 2208 records (too many to list)
SRR notused
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol Smart-seq2
Instrument HiSeq X Ten
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq Yes
Number of cells 2,103
Number of exp. genes 43,766 (median number of expressed genes per cell=4374)
Number of clusters 8
Tissue Spinal cord
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Pdgfra-H2B-GFP|strain=BlaC57BL/6NJck6|tissue=Spinal Cord|celltype=GFPpositive FACS sorted cells from spinal cord|;GSM3127215: SS2_16_295_P24_R1 Control; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 31.9 Mb)
data download (RPKM, R sparse data object, 81.6 Mb)
Cell clustering results
Putative cell types Fibroblasts, Macrophages, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.