Colon (Ulcerative Colitis)
SRA SRA703206
SRS SRS3296613
SRR SRR7159838
Species Homo sapiens
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 3,497
Number of exp. genes 31,780 (median number of expressed genes per cell=1932)
Number of clusters 15
Tissue Colon (Ulcerative Colitis)
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Colon|tissue=Colon|disease state=Ulcerative Colitis|;GSM3140595: Human_UC_1; Homo sapiens; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 19.5 Mb)
Cell clustering results
Putative cell types B cells, Dendritic cells, Endothelial cells, Fibroblasts, Smooth muscle cells, T cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.