Breast cancer cell line
SRA SRA704181
SRS SRS3305829
SRR SRR7165554
Species Homo sapiens
Sample (strain, genotype, etc.)
Tumor Yes
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Full-length mRNA-seq No
Number of cells 3,899
Number of exp. genes 28,087 (median number of expressed genes per cell=2863)
Number of clusters 12
Tissue Breast cancer cell line
Cell line (Y/N) Yes
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=MCF7 human cancer cell line|cell line background=MCF7|cell type=human cancer cell line|clone=subclone|;GSM3142227: MCF7-SC-WT3; Homo sapiens; RNA-Seq
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ]
Putative cell types Basal cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.