Breast cancer cell line
SRA SRA704181
SRS SRS3305829
SRR SRR7165554
Species Homo sapiens
Sample (strain, genotype, etc.)
Tumor Yes
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 3,899
Number of exp. genes 28,087 (median number of expressed genes per cell=2863)
Number of clusters 12
Tissue Breast cancer cell line
Cell line (Y/N) Yes
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=MCF7 human cancer cell line|cell line background=MCF7|cell type=human cancer cell line|clone=subclone|;GSM3142227: MCF7-SC-WT3; Homo sapiens; RNA-Seq
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Putative cell types Basal cells, Mammary epithelial cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.