Embryonic fibroblasts
SRA SRA711739
SRS SRS3344652
SRR SRR7223808
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument HiSeq X Ten
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 4,470
Number of exp. genes 31,961 (median number of expressed genes per cell=4878)
Number of clusters 11
Tissue Embryonic fibroblasts
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=MEF, XEN-like cell line and CiPSCs were digested into single cell and mixed in proportion|cell type=MEF, XEN-like cell line and CiPSCs|strain=C57BL/6J-Tg(GOFGFP)11Imeg/RbrcxICR|;GSM3160734: scRNA-Seq_MEF, XEN-like cells and CiPSCs; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 48.4 Mb)
Cell clustering results
Putative cell types Embryonic stem cell, Fibroblasts, Oval cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.