Leukocytes from aortas
SRA SRA728071
SRS SRS3458842
SRR SRR7425023
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 4,030
Number of exp. genes 25,796 (median number of expressed genes per cell=2425)
Number of clusters 14
Tissue Leukocytes from aortas
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Leukocytes from aortas of Ldlr -/- mouse fed with western diet|strain=C57BL/6|mouse genotype=Ldlr -/-|tissue=Cd45+ cells|;GSM3215435: Total leukocytes from Ldlr -/- aorta (Single cell RNA-seq); Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 24.1 Mb)
Cell clustering results
Putative cell types Macrophages, Monocytes, Smooth muscle cells, T memory cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.