Foam cells from aortas
SRA SRA728071
SRS SRS3458845
SRR SRR7425024
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 887
Number of exp. genes 25,138 (median number of expressed genes per cell=4269)
Number of clusters 5
Tissue Foam cells from aortas
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Foam cells from aortas of ApoE -/- mouse fed with western diet|strain=C57BL/6|mouse genotype=ApoE -/-|tissue=Foam cells|;GSM3215436: Total foam cells from ApoE -/- aorta (Single cell RNA-seq); Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 15.0 Mb)
Cell clustering results
Putative cell types Macrophages, Smooth muscle cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.