SRA SRA739096
SRS SRS3545819
SRR SRR7519474
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 5,798
Number of exp. genes 26,760 (median number of expressed genes per cell=2221)
Number of clusters 15
Tissue Colon
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Colon|tissue=Colon|genotype=Zeb2fl/fl|number of cells=4989|;GSM3270887: Colon Mac_WT; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 31.1 Mb)
Cell clustering results
Putative cell types Epithelial cells, Fibroblasts, Macrophages, Smooth muscle cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.