SRA SRA739096
SRS SRS3545821
SRR SRR7519475
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 5,129
Number of exp. genes 25,920 (median number of expressed genes per cell=2076)
Number of clusters 14
Tissue Colon
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Colon|tissue=Colon|genotype=Fcgr1-crexZeb2fl/fl|number of cells=4390|;GSM3270888: Zeb2KO Colon Mac; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 27.0 Mb)
Cell clustering results
Putative cell types B cells, Endothelial cells, Enterocytes, Fibroblasts, Macrophages list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.