Intestinal epithelium
SRA SRA745734
SRS SRS3600975
SRR SRR7611048
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 3000
Full-length mRNA-seq No
Number of cells 5,552
Number of exp. genes 27,832 (median number of expressed genes per cell=980)
Number of clusters 20
Tissue Intestinal epithelium
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Intestinal Epithelium|cell type=All epithelial cells|treatment=Whole body radiation (12 Gy)|strain=Crl:CD1(ICR)|;GSM3308720: Crypts-Irradiated; Mus musculus; RNA-Seq
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ]
Putative cell types Enterocytes, Gamma delta T cells, Goblet cells, Paneth cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.