SRA SRA822763
SRS SRS4137616
SRR SRR8310803
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Full-length mRNA-seq No
Number of cells 3,135
Number of exp. genes 20,134 (median number of expressed genes per cell=954)
Number of clusters 11
Tissue Aorta
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Mouse aorta|strain=C57BL/6|tissue=aorta|cell type=monocytes and macrophages|genotype=Cx3cr1CreERT2-IRES-YFP/+Rose26floxed-tdTomato/+|age=28 weeks|condition=severe atherosclerosis|;GSM3507490: Total TdTomato+CD11b+Dump- cells from progression group; Mus musculus; RNA-Seq
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ]
Putative cell types Alveolar macrophages, Macrophages, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.