Visual cortex
SRA SRA856483
SRS SRS4457870
SRR SRR8689256
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Full-length mRNA-seq No
Number of cells 5,793
Number of exp. genes 28,078 (median number of expressed genes per cell=2093)
Number of clusters 18
Tissue Visual cortex
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Acute cortical slices|tissue=brain|region=visual cortex|cell type=CGE-originating interneurons|developmental stage=juvenile (p21)|;GSM3637737: 5HT3A-GFP; Mus musculus; RNA-Seq
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ]
Putative cell types Astrocytes, Interneurons, Microglia, Neuroendocrine cells, Neurons, Oligodendrocytes, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.