SRA SRA862468
SRS SRS4512237
SRR SRR8755914
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina NovaSeq 6000
Full-length mRNA-seq No
Number of cells 1,776
Number of exp. genes 25,144 (median number of expressed genes per cell=1529)
Number of clusters 17
Tissue Lung
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) strain=C57BL/6|age=6-8 weeks|sex=male|tissue=Lung|sample_type=Single cell RNA-Seq|humidity_condition=50% RH|cell_types=Whole lung|infection_state=infected|replicate=replicate 2|BioSampleModel=Model organism or animal|;Single cell RNA-seq 50% RH infected
Gene search
Download Read counts: [ R data ] or [ Compressed plain text matrix ]
Clustering results: [ Plain text file ]
Putative cell types Alveolar macrophages, B cells, Clara cells, Endothelial cells, Erythroid-like and erythroid precursor cells, Fibroblasts, Macrophages, Monocytes, Neutrophils, NK cells, Pericytes, Pulmonary alveolar type I cells, T memory cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.