Dataset of the day
Take a closer look at the cellular composition of Aorta
, using a dataset which consists of 3135 cells. Clustering of this dataset resulted in cell clusters, containing among others, Macrophages
Ongoing work to move to new hosting.
A corrupted MySQL table caused dysfunction in the search function, the problem has now been fixed.
We are looking for sponsors to host PanglaoDB. We have modest requirements (VPS with Ubuntu, etc). Please get in touch with us if you can provide help (firstname.lastname@example.org).
Updated the 2d view for data sets (now colors by cell type and not by cluster and colors are consistent across data sets). For example, see this data set
Added more markers for Tanycytes
Added markers for Chromaffin cells
Markers for an additional cell types added: meet the sebocyte
Added sensitivity and specificity to the marker
list (shown separately for mouse and human).
Show older news
We are happy to announce
- a cloud-based single cell analysis service! Try it out
Metadata can be downloaded from our github repo
The marker download link ("get tsv file") is now a stable link. It can be linked directly in scripts.
Our manuscript entitled "PanglaoDB: A Web Server for Exploration of Mouse and Human Single Cell RNA Sequencing Data" has been accepted in the journal Database
Markers can be voted for. In an experiment to try to extract crowd-enabled wisdom, we have introduced a voting function for markers. Markers can be upvoted or downvoted using small arrows
on the marker page
. Each visitor has one vote per marker-cell type. An anonymous hash is computed to store voting status. Arrows become visible when selecting a specific cell type from the list. Voting does not require registration, and it is done anonymously.
Differential expression analysis now takes input threshold arguments (q-value and log fold change).
Differential expression analysis is now available. Enter the interactive view for a sample, then click the "Differential expression" link.